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Glossary

UC

ulcerative colitis

CD

Crohn’s disease

IBD

inflammatory bowel disease

IL

interleukin

GWAS

genome wide association studies

eQTL

expression quantitative trait loci

TLR

toll-like receptors

PAMPs

pathogen associated molecular patterns

Th

T helpers

HSCT

hematopoietic stem cell transplant

CDAI

Crohn’s disease activity index

16S

16S rRNA

RGCCA

regularized canonical correlation analysis

MCIA

multiple co-inertia analysis

OTUs

operational taxonomic units

ASV

amplicon sequence variant

CGH

comparative genomic hybridization

PPI

pre-pouch ileum

PCA

principal component analysis

AVE

average variance explained

PERMANOVA

permutational multivariate analysis of variance

AUC

area under the curve

ROC

receiver operating characteristic

BARCELONA

Biologic Assesment of Response and relation to Clinical activity, Endoscopic and radiologic Lesions, in inflammatory bowel disease patients ON Anti TNF-therapies

GE

gene expression

TNF

tumor necrosis factor